GIFs, as far as I know, don't work. I think the way you can get around to using animated sprites is by using double PNG files. But I don't think Shoddy supports that. Ask bearzly for more help on that. 'Cause as far as I know, it doesn't work.
Are you saying to put the folders on the desktop, then put them back in 1.0? I think I've misunderstood, 'cus that does nothing.i think the reason you don't see all the back sprites is because you've never used that pokemon on shoddybattle
and to get the new sprites try this
extract the frontnormal and frontshiny to your desktop
then drag those files into the 1.0 folder
something should pop up and say DO YOU WANT TO MOVE AND REPLACE? say yes
oh yeah, and ignore those files that are called asdsd89f6s89adfads8ofyds8fsdf